PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g028640.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 363aa MW: 41142.9 Da PI: 7.9977

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g028640.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.6e-11	79	109	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k++rr+++NReAAr+sR RKka++++Le+ Sopen04g028640.1 79 SDKVQRRLAQNREAARKSRMRKKAYVQQLET 109 79***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.4E-10	77	121	No hit	No description
SMART	SM00338	6.2E-6	77	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	79	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.002	79	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-7	81	116	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.1E-29	167	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNMTSPTTQF APTRRMGIYE PFHQMSVWED AFRGDIMPSA DACMVSHPND RPDDKSGYTS 60 GEQHMPSGSG DNQGPRSSSD KVQRRLAQNR EAARKSRMRK KAYVQQLETS RLKLAQLELE 120 LERARQQGLY MLGSNSNMGL LGTINPGIAA FEIEYSHWVE EQQKKNAELR SILQSPVSDM 180 ELQLLVENVL SHYFNLFRMK ADAAKADVFY LMSGMWRTSV ERFFLWIGGF KPSELINVVM 240 PQLEPLADQQ IIKVCNLRHC CQQAEDALTQ GMDKLQQTLA QSILNMNTGA GNYTSQMVSS 300 MENLEALESF VNQADHLRQQ TLQQMSIILS THQAARGLLA FGEYVQRLRA LSSLWAARPR 360 KPT

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNMTSPTTQF APTRRMGIYE PFHQMSVWED AFRGDIMPSA DACMVSHPND RPDDKSGYTS  60
GEQHMPSGSG DNQGPRSSSD KVQRRLAQNR EAARKSRMRK KAYVQQLETS RLKLAQLELE  120
LERARQQGLY MLGSNSNMGL LGTINPGIAA FEIEYSHWVE EQQKKNAELR SILQSPVSDM  180
ELQLLVENVL SHYFNLFRMK ADAAKADVFY LMSGMWRTSV ERFFLWIGGF KPSELINVVM  240
PQLEPLADQQ IIKVCNLRHC CQQAEDALTQ GMDKLQQTLA QSILNMNTGA GNYTSQMVSS  300
MENLEALESF VNQADHLRQQ TLQQMSIILS THQAARGLLA FGEYVQRLRA LSSLWAARPR  360
KPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014216	0.0	BT014216.1 Lycopersicon esculentum clone 133394F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015071682.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_015071683.1	0.0	transcription factor TGA1-like isoform X2
Refseq	XP_015071684.1	0.0	transcription factor TGA1-like isoform X2
Swissprot	Q39237	1e-152	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A3Q7G6X7	0.0	A0A3Q7G6X7_SOLLC; Uncharacterized protein
STRING	Solyc04g072460.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-141	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]