PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g031110.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 595aa    MW: 64143.9 Da    PI: 8.2231
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g031110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24204248145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Sopen04g031110.1 204 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 248
                       79****************************************985 PP
2QLQ60.16.2e-21136172137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++FT++Q+++L++Q+l+yKy+ an P+Pp+Ll +i+k
  Sopen04g031110.1 136 GPFTPSQWMELEHQALIYKYITANIPIPPYLLNPIRK 172
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.7E-12136172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.118137172IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-15137171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663204248IPR014977WRC domain
PfamPF088797.1E-21205247IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDFGGLESGG GGVICSDNTT MFVASAETKQ KWYGSGGFNK HERSSVTEDE WNKESKLAKT  60
SDDFSSTKAT MMFHQLPISH DNQQMLSFST PNSQNHVTMP YYNQPPSTAF ARNTSGYGSG  120
ALNAGNMHGL IAGIKGPFTP SQWMELEHQA LIYKYITANI PIPPYLLNPI RKALESAGFS  180
TFAGLRPNAL GWGAFHLGFS NSNDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH  240
RSRKPVEGQT GNSASGNNTG VPTTSAKLTN MPSAASAALA SGGGAAASNS LNLSHHNQLS  300
NLQPAGTNLS TTSPYLERSY TAKENFGERY SDTKGSSVVS ASVKEPQYSI QKAQNLYGLT  360
SRAEFGLVCA DSLINPLNKN SSLVNCRGYV NSDVSDQESK SQHHPLRQFM DEWPKNQSDQ  420
SNVSWPDIDL QSDPTQLSIS IPLVTSDFMS STSSPANDKL TASPRRSREH EATQMGLGIG  480
TIISEHNQRQ GSWIPISWET SLGGPLGEVL HSTNSSSGDC KNKSALNLMT EGWDRSPRMG  540
SSPTGVLQKS SFGSLSNSSA GSSPRAEHSK TTNEGSSLCN GLLGTTLMNP TLPAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9978520.0FJ997852.1 Capsicum annuum UPA17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074246.10.0growth-regulating factor 1-like
TrEMBLA0A3Q7G8H80.0A0A3Q7G8H8_SOLLC; Uncharacterized protein
STRINGSolyc04g077510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.16e-91growth-regulating factor 1