PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g031590.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 204aa MW: 22219.3 Da PI: 6.9147

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g031590.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.6	5.4e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlrr+C+++C+l+ ++ p++q +++ +v k+FG+s +++l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++ Sopen04g031590.1 2 SCNGCRVLRRRCSDNCTLRTCLdgiddPQAQGNATLFVSKFFGRSDLMSLIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVC 94 6****************************************************************************************** PP DUF260 89 qlkaelallk 98 q++++++l++ Sopen04g031590.1 95 QKAVQTVLAG 104 *9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.852	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR TCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVQT VLAGGNLRPV FAGILTPPYF 120 DSSFRCGGAW DMPNQFCNKS GSMFIDGSEQ IEGMEWISSE KRWNTSSCFG SETELSDVSL 180 GLDSGYGYAE CVKGQEPKLL NLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015072913.1	1e-150	LOB domain-containing protein 38-like
Swissprot	Q9SN23	8e-52	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A3Q7G6A5	1e-146	A0A3Q7G6A5_SOLLC; Uncharacterized protein
STRING	Solyc04g077990.2.1	1e-147	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-54	LOB domain-containing protein 38