PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g032290.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 314aa    MW: 34130.6 Da    PI: 5.1949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g032290.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.82.9e-16138184455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Sopen04g032290.1 138 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.71E-18128188No hitNo description
SuperFamilySSF474595.63E-20131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-19131191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-14138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MADPYRTNPH ASSSLESEDM SSFFLNFLQG TSASSSATAA AGFYNRSVPA PVAESSSSLN  60
FSDPGRFYAA EFKEGVENVF ASAGLGDCDG MNSANRREFL EDDKVDNFGF SSEECDGLDM  120
PSDPTHPRSS KRSRSAEVHN LSEKRRRSRI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL  180
KQLQLQVQML TLRNGLSLYP GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP  240
QTAFEISNQN PSGKPTITSH NTENAVALET TVQNHYGLLN HLASSKDMCR DNTLSRLHLD  300
MSCSGNNSSS GVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073590.20.0probable serine/threonine-protein kinase At1g01540
TrEMBLA0A3Q7H2100.0A0A3Q7H210_SOLLC; Uncharacterized protein
STRINGSolyc04g078690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-37bHLH family protein