PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g032370.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 351aa    MW: 39958.9 Da    PI: 7.9638
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g032370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-36251172103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll
  Sopen04g032370.1  25 FLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLL 108
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  Sopen04g032370.1 109 CEIHRRKTA 117
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPV  120
QSMSMNHPHS GFFPNYPSTY NPRLSVSPPD SDDQLYQQQN INWCDSPCSN NNNASNTVTA  180
LSEDNDRLRR SNNMLMSELA HMRKLYNDII YFVQNHVKPV TPSSSYNTCS LLPASATPIV  240
QKNMNIHHHQ FGYQQITNPK NIVISNINTN NIVSPSKTSQ SSSVTILDEG NGGDNTSTKL  300
FGVPLMSKKR VHPEYSSSYY STTNMVEKNK ARLMVLEKND LGLNLMPPSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222111717123Heat shock factor protein 1
5d5u_B2e-222111626131Heat shock factor protein 1
5d5v_B2e-222111626131Heat shock factor protein 1
5d5v_D2e-222111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072299.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-106HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A3Q7G6L30.0A0A3Q7G6L3_SOLLC; Uncharacterized protein
STRINGSolyc04g078770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-99heat shock transcription factor B4