PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g032740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 235aa    MW: 26737.7 Da    PI: 9.9413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g032740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.2e-19129215498
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        ++ps+v+   +l lp +f++++   ++++ t+tl de+g++W   +    ++++  l++GWk+F  +++L +gD++vF+l++ ++f  +v +
  Sopen04g032740.1 129 PMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVY--LAQKCG--LSGGWKRFSVDHDLADGDTIVFHLIRPTKF--KVYI 213
                       6899****************9995..346679***************..555555..9************************97777..8888 PP

                       E- CS
                B3  97 fr 98 
                       +r
  Sopen04g032740.1 214 IR 215
                       77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-25119217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-21119216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-26124215No hitNo description
SMARTSM010194.6E-24126217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578126217IPR003340B3 DNA binding domain
PfamPF023629.4E-17129215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVKYEDLRKQ RLEENKKRME ELNLPLLTQA LKNSTSPKTT PMKRTKPRVV GTELVAVRRS  60
PRVAKSPAPE YKEVIHYERV MIPRRLATPT KRDRLFFAYA SDEERAASIE KAEKLEASLG  120
SDYPILVRPM LPSHVSGGFW LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKCGL  180
SGGWKRFSVD HDLADGDTIV FHLIRPTKFK VYIIRVNNAS ETVSTETSTS SSEAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-114HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072119.11e-174B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ41e-67Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLM1ADZ41e-160M1ADZ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000207001e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]