PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g033400.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 691aa MW: 77935.7 Da PI: 6.9549

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g033400.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	490	527	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps++++ L++++gL+++qV++WF N R + Sopen04g033400.1 490 FEHflHPYPSEADKHLLSRQTGLSKNQVSNWFINARVR 527 554459******************************88 PP
2	BELL	111.4	4.9e-36	350	421	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e q++k kLls+l+eVd rY +y+eq+q++++sF+ v+g+g+a+pYt+lA+ka+SrhFrc+kdai++q+ Sopen04g033400.1 350 ERSEYQRRKIKLLSMLDEVDARYTRYCEQMQAMVNSFDSVIGYGAAAPYTALAQKAMSRHFRCIKDAIVGQL 421 789******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-55	282	419	IPR006563	POX domain
Pfam	PF07526	1.6E-48	288	418	IPR006563	POX domain
PROSITE profile	PS50071	12.422	468	531	IPR001356	Homeobox domain
CDD	cd00086	1.08E-11	471	532	No hit	No description
SMART	SM00389	1.8E-9	471	535	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-17	472	538	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	474	537	IPR009057	Homeodomain-like
Pfam	PF05920	7.6E-18	488	527	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MSHSFHQHQG FYNFSNVYER SATTTTKHED MLRVQGFEPQ QVEVAAAAVE PPPTATVYDD 60 GGMLTEIISY PTAWRKTATE ILDDQIQSSN YRSWPQKEQQ HLQQQQQQLL PQSIINDTEL 120 PLMNPHIKPS SPPRSSSSLH MLLPNSVDTN NLLHHQGFHL LNPAPVETPS QFTWVPGSSS 180 GEDNSARIGR VVDGQGLSLS LSRNFEAAAK LEDLRIGNGE IYLHNNQGLL GPINNNNNHH 240 HHHQLLHSGV IMDHRTPPHP LPPHTSTGHH HQIHVGYAAS SPRISNALRN SRYVKATQEL 300 LEEFCCVGRG NFKNQRVKKL DDDQNPNSNS ESEDHRGPSK DNHPPLSAAE RSEYQRRKIK 360 LLSMLDEVDA RYTRYCEQMQ AMVNSFDSVI GYGAAAPYTA LAQKAMSRHF RCIKDAIVGQ 420 LKQTCKYLGE KDVTGTSGLT KGETPRLKML DQKLRQQKAL HQMGMLDSDA WRPQRGLPER 480 SVNVLRAWLF EHFLHPYPSE ADKHLLSRQT GLSKNQVSNW FINARVRLWK PMVEEMYQQE 540 TKEEEIDQEE EEEQEQQQQE KQAQIPMHNM ATSPAATTTK TTTISLSSSV RSKFNANERD 600 PSENIINYRQ YALGNQLVML QSDDTATAST SNHHYFTAVN AVDLVANPNA ANTAAFGSQQ 660 AGDVSLTLGL RHSDNVPRKP TQFQLRDFGA Y

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MSHSFHQHQG FYNFSNVYER SATTTTKHED MLRVQGFEPQ QVEVAAAAVE PPPTATVYDD  60
GGMLTEIISY PTAWRKTATE ILDDQIQSSN YRSWPQKEQQ HLQQQQQQLL PQSIINDTEL  120
PLMNPHIKPS SPPRSSSSLH MLLPNSVDTN NLLHHQGFHL LNPAPVETPS QFTWVPGSSS  180
GEDNSARIGR VVDGQGLSLS LSRNFEAAAK LEDLRIGNGE IYLHNNQGLL GPINNNNNHH  240
HHHQLLHSGV IMDHRTPPHP LPPHTSTGHH HQIHVGYAAS SPRISNALRN SRYVKATQEL  300
LEEFCCVGRG NFKNQRVKKL DDDQNPNSNS ESEDHRGPSK DNHPPLSAAE RSEYQRRKIK  360
LLSMLDEVDA RYTRYCEQMQ AMVNSFDSVI GYGAAAPYTA LAQKAMSRHF RCIKDAIVGQ  420
LKQTCKYLGE KDVTGTSGLT KGETPRLKML DQKLRQQKAL HQMGMLDSDA WRPQRGLPER  480
SVNVLRAWLF EHFLHPYPSE ADKHLLSRQT GLSKNQVSNW FINARVRLWK PMVEEMYQQE  540
TKEEEIDQEE EEEQEQQQQE KQAQIPMHNM ATSPAATTTK TTTISLSSSV RSKFNANERD  600
PSENIINYRQ YALGNQLVML QSDDTATAST SNHHYFTAVN AVDLVANPNA ANTAAFGSQQ  660
AGDVSLTLGL RHSDNVPRKP TQFQLRDFGA Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	477	535	5	63	Homeobox protein Meis2
3k2a_B	3e-16	477	535	5	63	Homeobox protein Meis2
4xrm_A	3e-16	477	535	5	63	Homeobox protein Meis2
4xrm_B	3e-16	477	535	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073724.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-134	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U8GBH8	0.0	A0A1U8GBH8_CAPAN; BEL1-like homeodomain protein 4
TrEMBL	A0A2G2X0S6	0.0	A0A2G2X0S6_CAPBA; Homeobox protein BEL1-like protein
STRING	Solyc04g079830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-121	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]