PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g033520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 389aa    MW: 43368.2 Da    PI: 4.816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g033520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM255.2e-083711829128
               NAM  29 eleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                       +    + e++ y+++P++Lp       +  +f +++ +        +++t+ g W+ + +  e+++ ++   g ++t  f++ +a+  +kt  
  Sopen04g033520.1  37 PD--DLIEFNPYQYDPSNLP-------DGAWFLVRKTE--------EKSTEYGLWRVKDSACEIFA-NSDISGWRTTYEFFQVQASIEQKTVY 111
                       33..4567788889999998.......22344444433........356899**************.9999********************** PP

               NAM 122 vmheyrl 128
                       +mhey++
  Sopen04g033520.1 112 IMHEYKV 118
                       *****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
PROSITE profilePS5100514.8439140IPR003441NAC domain
SuperFamilySSF1019417.59E-1119137IPR003441NAC domain
PfamPF023651.3E-434117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRPLSPSAPP PGLMSSCGTD GEIFLVLHQI NRGSPIPDDL IEFNPYQYDP SNLPDGAWFL  60
VRKTEEKSTE YGLWRVKDSA CEIFANSDIS GWRTTYEFFQ VQASIEQKTV YIMHEYKVTP  120
KGQRDLTKSQ ESAICRFFGL WNDAEQDDVR HLLSYFSFIP SVNPDTSGND GQRSIAEPQV  180
NGQIEGAGSS LVDKWIDQSE IDCIMRGDYL ELNDLIDGAS HDSSSSENTS RQSFVSDEFF  240
NSRALLAELD DEKKEDLSGK GSLLAELNDE KKEDLSGKGS TSNHHTIMMC QIANDVVVQP  300
GPLGFVFIGN DAKAKETQQT PDNDKSKSQD QAVKKMKAAK KLKDEGPSHA RRATSSSSSN  360
SSSDEPGRAA RREEKRSKKL MKFLCFMPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071782.10.0uncharacterized protein LOC107015875 isoform X1
TrEMBLA0A3Q7G7680.0A0A3Q7G768_SOLLC; Uncharacterized protein
STRINGSolyc04g079940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.21e-07NAC domain containing protein 80