PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034090.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 78aa    MW: 9147.47 Da    PI: 9.609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034090.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.7e-10348346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      +WT+   +++ +a +++  +   +W+ Iar++g g+++ ++k ++  
  Sopen04g034090.1  3 SWTARQNKKFEEALALYDRDtpdRWHNIARCVG-GKSAAEVKRHYEV 48
                      6*****************99*************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-7152IPR001005SANT/Myb domain
PROSITE profilePS5129311.611154IPR017884SANT domain
SuperFamilySSF466891.14E-13357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-6356IPR009057Homeodomain-like
CDDcd001672.18E-7350No hitNo description
PfamPF002492.5E-7347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASWTARQNK KFEEALALYD RDTPDRWHNI ARCVGGKSAA EVKRHYEVLV KDIMQIENGQ  60
VPLPNYNEHR LLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-284781193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-113HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072927.12e-53protein RADIALIS-like 6
SwissprotQ1A1732e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3Q7G7H21e-48A0A3Q7G7H2_SOLLC; Uncharacterized protein
STRINGSolyc04g080500.2.12e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-33RAD-like 6