PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 407aa    MW: 44309.9 Da    PI: 7.8873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-052983361255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Sopen04g034300.1 298 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 336
                       7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-5296340No hitNo description
SuperFamilySSF474598.11E-11296348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-9300343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEPANLHQQY QYHQLQFQDQ FPLIGISPNS SSSSNNSCYG GVSTTNTWTP CTTTNTTILN  60
SHGSGLINSS YSSGDIINTT NSSSSDHPLN LVNSMSSTTH QDLGFHQWAN NNIKQENSLD  120
NSYQRFTQML KSPEEGGELS DMNAKLLLGT LSNTGLQLYH GDNNNNNLVY SSNSSSISTI  180
NRGRFSQIYP TINVSNLNIN HQANSCSSLD MNLQPLDLIN STRYGGSFSQ TYGLTTNHFQ  240
HSSSESPVNS STSISAFSNG MPEAKRTSNT LETNKGPQNA PKKSRVDSRA SCPPFKVRKE  300
KLGDRIAALQ QLVAPFGKTD TASVLMEAIG YIKFLQNQVE TLSVPYMKSS RSKASRSLHG  360
GGGEMNNEEM KRDLRSRGLC LVPLTCLTYV TEGGGGVWPP PNFTGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071751.10.0transcription factor bHLH110 isoform X2
TrEMBLM0ZWL20.0M0ZWL2_SOLTU; Uncharacterized protein
STRINGSolyc04g080710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-61bHLH family protein