PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 254aa    MW: 27678.3 Da    PI: 4.4119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.2e-173079255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr++  +g+WvAeIr+p   + r +r +lg+f+  ++Aa  ++aa++kl+g
  Sopen04g034520.1 30 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDNSYDAAVVYDAAALKLYG 79
                      69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-192989No hitNo description
Gene3DG3DSA:3.30.730.104.9E-283088IPR001471AP2/ERF domain
SMARTSM003801.6E-323093IPR001471AP2/ERF domain
PfamPF008475.0E-103079IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-193088IPR016177DNA-binding domain
PROSITE profilePS5103221.2723087IPR001471AP2/ERF domain
PRINTSPR003671.1E-73142IPR001471AP2/ERF domain
PRINTSPR003671.1E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSNSKKLIP ATSRKGCMRG KGGPENANCT YKGVRQRTWG KWVAEIREPN RGARLWLGTF  60
DNSYDAAVVY DAAALKLYGA EAKLNLPHLY NNQAQAHAQA QIQNSKPITI MSPSLSPAST  120
TTAQASSPSV TSVYNVASPS TWSVGSDDSS FYFNSHDFGI NNDIPSAFNL IDINKTADDY  180
PDDYPVDNAT NDNQSSQVLG GEMFRDLNMN LPEIDDSSIW EEAKATTSFQ EAVNDPGIGG  240
YNLDDDLNFP PWCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-173187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073149.10.0dehydration-responsive element-binding protein 2B-like
TrEMBLA0A3Q7H3561e-155A0A3Q7H356_SOLLC; Uncharacterized protein
STRINGSolyc04g080910.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-38ERF family protein