PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g001250.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 194aa MW: 21783.9 Da PI: 8.3308

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g001250.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	181.9	3.7e-56	7	160	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCt+lls+nl k s +l a+ ++ ++ k++ +++++ ++ n k ++ e Sopen05g001250.1 7 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKMVTVRCGHCTTLLSLNLIKPSlHLFASFDQ-THQPKPPEVDKDEIDDANKKNSNSDE--- 95 789999*********************97369***********98776266666666.55555554444444443322222111... PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++ e++ +p + v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ Sopen05g001250.1 96 -----E---DQLENNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKNWAHFPP 160 .....1...223344556555699*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.6E-55	12	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-8	108	162	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.4E-5	111	162	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSTLNNHLFE LQDTICYVQC GYCTTILLVS VPCSSLCNKM VTVRCGHCTT LLSLNLIKPS 60 LHLFASFDQT HQPKPPEVDK DEIDDANKKN SNSDEEDQLE NNVLPLNQVV NKPPEKRQRA 120 PSAYNCFIKE EIKRLKTLYP NMTHKQAFST AAKNWAHFPP SQHRGGCSLG ERKMAKVSAA 180 RNSMVPRDSN GLIP

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	9e-67	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075232.1	1e-145	axial regulator YABBY 4
Swissprot	Q9LDT3	5e-55	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A3G4YK59	1e-138	A0A3G4YK59_SOLCE; INNER NO OUTER
TrEMBL	A0A3G4YK72	1e-138	A0A3G4YK72_SOLPI; INNER NO OUTER
TrEMBL	A0A3Q7G929	1e-138	A0A3Q7G929_SOLLC; Uncharacterized protein
STRING	Solyc05g005240.1.1	1e-139	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-57	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]