PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g001310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 447aa    MW: 49642.2 Da    PI: 6.0751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g001310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-14268311755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+ri++++++Lr l+P+      +K++K++iL  A++YI++Lq
  Sopen05g001310.1 268 VTERKRRNRIKDGLFTLRALVPNI-----TKMDKVAILGDAIDYINELQ 311
                       57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-931121IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.624261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-17263328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-14263315No hitNo description
SMARTSM003531.7E-15267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16268329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11269311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGCCCSGANG VDVNVKRENG GKQTFSSLCR DIQVQHPIRT KACEALAHFP HSISLYSGIQ  60
AEVVTSNEPK WINHAEISNS NLSHELKGTL VLIPVAGGLV ELYNSKMIYK DQKTINFIIN  120
RFKLGSEEAN SSVAQKEDQV LDFFPYEKSN FCAPLLQYAT SFPSSAPHIS QVSESSANPS  180
IQGSSTGSIP SNELTLCHSP PDHLSRNVPL SQSTEGYFEH TELQCSGNLS RMEDTIFPWK  240
QENYIVAGDM FSMGKKRQKG PYQSKNLVTE RKRRNRIKDG LFTLRALVPN ITKMDKVAIL  300
GDAIDYINEL QEKVKLYEIE LNKIEAEVTN NESTPEMVLS DMTEMSKVTG QTNEKTQISV  360
NTTDRTRMEV EVNQIGAREF LLKVSGSRKP GGFTQLMEAM NYLGLELVNV SCTTSGGEIV  420
SVYIVEANVD RFIDAQKLRS SLIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259GKKRQKG
2254273KKRQKGPYQSKNLVTERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075794.10.0transcription factor bHLH90
TrEMBLK4BW610.0K4BW61_SOLLC; Uncharacterized protein
STRINGSolyc05g005300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-32bHLH family protein