PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g001420.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 191aa MW: 21700.1 Da PI: 4.1263

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g001420.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	97.8	8.7e-31	21	104	2	87
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqdr++P nv+rim+ + P + is+dak t+ +c+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl y+ Sopen05g001420.1 21 QEQDRVIP--NVARIMRSTHPPHVNISDDAKRTMYHCISEFICFVTYEANSHCQREQRNTITEEDVDWVINKFGFDDYIEPLPYYF 104 68999987..************************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-27	20	103	IPR009072	Histone-fold
SuperFamily	SSF47113	7.21E-23	27	108	IPR009072	Histone-fold
Pfam	PF00808	2.4E-17	29	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEMSLELPAH LNQEVVDIII QEQDRVIPNV ARIMRSTHPP HVNISDDAKR TMYHCISEFI 60 CFVTYEANSH CQREQRNTIT EEDVDWVINK FGFDDYIEPL PYYFPPNSED DGGECGSLTR 120 ESLLKRSMVD TTSSSNITPY NVPPSFPMAY HHFVYPPPMG NGDMEGEAST SQCAVASVDT 180 DVESPMEEDK E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-32	20	104	6	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075924.1	1e-141	nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A3Q7G952	1e-127	A0A3Q7G952_SOLLC; Uncharacterized protein
STRING	Solyc05g005360.1.1	1e-127	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14016	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-34	nuclear factor Y, subunit B6