PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g001440.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 238aa MW: 26573.5 Da PI: 4.8947

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g001440.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	155.9	6.8e-49	59	152	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrf+Pianv+r m+k+lP naki++++k ++qecvsefisfvt+ea+d+c+ ekrkti+++dllwa+ +lGf++yvepl++yl++yrel+ Sopen05g001440.1 59 REQDRFMPIANVVRNMRKILPPNAKIADESKLVIQECVSEFISFVTGEANDRCKLEKRKTITAEDLLWAMNSLGFDNYVEPLTLYLQRYRELD 151 89*****************************************************************************************98 PP NF-YB 95 g 95 g Sopen05g001440.1 152 G 152 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-46	53	157	IPR009072	Histone-fold
SuperFamily	SSF47113	2.48E-35	61	156	IPR009072	Histone-fold
Pfam	PF00808	1.2E-21	64	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.3E-18	92	110	No hit	No description
PROSITE pattern	PS00685	0	95	111	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.3E-18	111	129	No hit	No description
PRINTS	PR00615	7.3E-18	130	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MANNNNVGSG NGGFHNYRRS PQPTLARSPS SDIERSVELP SHLNQEIAAN EEDSECTIRE 60 QDRFMPIANV VRNMRKILPP NAKIADESKL VIQECVSEFI SFVTGEANDR CKLEKRKTIT 120 AEDLLWAMNS LGFDNYVEPL TLYLQRYREL DGGERGSLRV DHFPLKRPTV NPASGYNLMP 180 NHLPPNFPMA NHNGYYVYPP PMDNSYRQGD ASSGSTSHEC AVAAVDGDVE SPAEKSEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-50	54	149	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075834.1	1e-179	nuclear transcription factor Y subunit B-4-like
Swissprot	Q84W66	4e-56	NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBL	A0A3Q7GBK2	1e-146	A0A3Q7GBK2_SOLLC; Uncharacterized protein
STRING	Solyc05g005390.1.1	1e-161	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-56	nuclear factor Y, subunit B6

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Li D, et al. MYB89 Transcription Factor Represses Seed Oil Accumulation. Plant Physiol., 2017. 173(2): p. 1211-1225 [PMID:27932421] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087]