PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g001460.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 208aa MW: 23276.2 Da PI: 5.1252

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g001460.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	130.4	6.2e-41	59	152	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 re+drf+Pi+nv+rim+k+lP n kis+ k ++qecvsefi+f+t+ea++ cq ++rkti+++dll a+ +G++dyve+l +yl++yre + Sopen05g001460.1 59 REHDRFMPITNVIRIMRKILPPNVKISDGFKLMIQECVSEFIGFITGEANNCCQLDQRKTITAEDLLRAMDRFGYDDYVETLALYLHRYREYD 151 89*****************************************************************************************87 PP NF-YB 95 g 95 g Sopen05g001460.1 152 G 152 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-39	54	158	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-31	62	155	IPR009072	Histone-fold
Pfam	PF00808	1.9E-18	64	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-10	92	110	No hit	No description
PRINTS	PR00615	1.3E-10	111	129	No hit	No description
PRINTS	PR00615	1.3E-10	130	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDDGNLVGLG DGGFHSYCRS PQRTSASSPS PDMEMSLELP ADLEQTIAAN VEHSERTIRE 60 HDRFMPITNV IRIMRKILPP NVKISDGFKL MIQECVSEFI GFITGEANNC CQLDQRKTIT 120 AEDLLRAMDR FGYDDYVETL ALYLHRYREY DGGCRSTRRE RLLLRSSMVN PASGCNITPY 180 QGDASNGSTS QGDAVNIKVQ SPAKETKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-44	54	149	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027772814.1	1e-156	nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_027772815.1	1e-156	nuclear transcription factor Y subunit B-1-like isoform X1
TrEMBL	A0A3Q7GBK9	1e-121	A0A3Q7GBK9_SOLLC; Uncharacterized protein
STRING	Solyc05g005440.1.1	1e-146	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.1	2e-46	nuclear factor Y, subunit B6