PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g002940.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 259aa    MW: 30285.4 Da    PI: 4.4371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g002940.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-184194356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k++++ ++q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  Sopen05g002940.1 41 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 94
                      45578899*********************************************9 PP
2HD-ZIP_I/II124.84e-4040131192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl  +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy+aLk+++d+lk++ ++L ke+e+Lr+e++
  Sopen05g002940.1  40 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDALKASFDKLKADYDTLFKENEDLRNEVH 131
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-182996IPR009057Homeodomain-like
PROSITE profilePS5007117.073696IPR001356Homeobox domain
SMARTSM003894.2E-1839100IPR001356Homeobox domain
CDDcd000864.77E-164196No hitNo description
PfamPF000461.6E-154194IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1844104IPR009057Homeodomain-like
PRINTSPR000318.6E-66776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000318.6E-67692IPR000047Helix-turn-helix motif
PfamPF021835.8E-1696137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVNFEDVGRG EVSKERSFFP EIDKEETSND DYDSCYHQPE KKRRLLPNQV QFLEKSFEVD  60
NKLEPERKVQ LANELGLQPR QIAIWFQNRR ARYKTKVLEK DYDALKASFD KLKADYDTLF  120
KENEDLRNEV HLLTQKLHIR EKGKENSEQS EPISPIDTQE AQKATTPIVV TSNVPKLMCK  180
QEDATSAKSD VIDSDSPHYT DGNYSSNVFE QEPSDFSQDE DDNLSKNFLY FPEIGDQIQA  240
NSCNLSFQIE DQPCWFWQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074723.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A3Q7GE200.0A0A3Q7GE20_SOLLC; Uncharacterized protein
STRINGSolyc05g006980.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-44homeobox 1