PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g003890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 190aa    MW: 21834.7 Da    PI: 8.9676
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g003890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-1964118256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ ++tk+q   Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Sopen05g003890.1  64 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSK 118
                       78889************************************************98 PP
2HD-ZIP_I/II111.65.3e-3664152189
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       +kk+rl+k+q+ lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+
  Sopen05g003890.1  64 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLKKEVEELRA 152
                       69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1743118IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1850121IPR009057Homeodomain-like
PROSITE profilePS5007116.82760120IPR001356Homeobox domain
SMARTSM003894.4E-1662124IPR001356Homeobox domain
CDDcd000866.75E-1463121No hitNo description
PfamPF000461.7E-1664118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PfamPF021835.0E-10120154IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-20120163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSIPGSSSNS SSFPSSGEGG GGRYNMMREL DINQIPSNIN EEEISMEEEE EESSNNNNIN  60
GAPRKKLRLT KQQSFLLEES FRQNHTLNPK QKEALAMQLK LKARQVEVWF QNRRARSKLK  120
QTEMECEYLK RWFGSLSEQN RRLKKEVEEL RAMKVGPPTV LSPHSCHPLP ASTLTMCPHC  180
ERVTRTNVRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-124HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772955.11e-138homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-75HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-75HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLM1CZW35e-99M1CZW3_SOLTU; Uncharacterized protein
STRINGSolyc05g008050.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-60homeobox-leucine zipper protein 17