PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g004980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 398aa    MW: 44236.8 Da    PI: 6.2429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g004980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.8e-10136176650
               AP2   6 VrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 
                       Vr +k +g+++ eIrd +     + kr++lg+f t+eeA + +   +
  Sopen05g004980.1 136 VRKRK-SGKFATEIRDpF-----SkKRIWLGTFNTPEEASEVYQSKK 176
                       89888.7*********66.....44**************99886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.973127192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-14136181IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-10136180IPR016177DNA-binding domain
CDDcd000185.63E-14136172No hitNo description
SMARTSM003801.3E-6136186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MKSKIKQDCI DENEVMEIER TIRVKISDPD ATESSSDDEK QEKRPKIIVH EIVQKKVKIQ  60
SFLLNSKNPL DFYQLPPPRV RKRKYQKKGV SAKSGNPPLM VDSQNLDLTK VKTCFSIKNR  120
SPLSLEQSSG KLPPMVRKRK SGKFATEIRD PFSKKRIWLG TFNTPEEASE VYQSKKLEFQ  180
EKLEKARNAN VDKVISAKFE LGSSSSSDPP LMADSQNTDS SNESVDRLKM AKNAKEKMVI  240
SAKFELGSSS SSDPSLIADS RNTDSSNESG DILKKSKNAK EKMVIFANSE PGSSSSEPIL  300
MVDEIDEQLN KAINANVEKG ISSKSELGSS SSDQVDAQTS DSSNGVEESD EDLWMGQWIQ  360
ISGDKEVKFS QKLGVPVVDN YGYLLGEFSK LDDLSISV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075168.10.0ethylene-responsive transcription factor ERF116-like
TrEMBLA0A3Q7GFC00.0A0A3Q7GFC0_SOLLC; Uncharacterized protein
STRINGSolyc05g009250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1553156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.19e-15ERF domain protein 11