PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g004990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 219aa    MW: 24810.7 Da    PI: 4.7171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g004990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-101860450
               AP2  4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50
                       GVr +k +g++ AeI++ +     + k ++lg+f ta+eA++ +   +
  Sopen05g004990.1 18 VGVRKRK-NGKFCAEIKHpF-----NkKLIWLGTFVTADEAYESYKSKK 60
                      6***999.8*********55.....34***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-41570IPR001471AP2/ERF domain
PROSITE profilePS5103212.7081682IPR001471AP2/ERF domain
CDDcd000181.55E-121856No hitNo description
SuperFamilySSF541715.89E-101863IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-121963IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKSKKKISTN FSVRLYPVGV RKRKNGKFCA EIKHPFNKKL IWLGTFVTAD EAYESYKSKK  60
VEFEELVMAK EAKKRQKNGN FDRECGSSDE YEEKSLMGIA ENSNSSNGVE ENIDFFAEEK  120
QKSLMGIAEN SNSSNGVEGK INFFAEEKHE SLMGDSENLN LNSISSNGEE SDEELFKGTW  180
VKNSEGKEVM FSYNLGVPII DNYGFLLGEF SDLDDLTFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323KKKISTNFSVRLYPVGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075253.11e-156ethylene-responsive transcription factor ERF119-like
TrEMBLA0A3Q7GFC01e-107A0A3Q7GFC0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000377582e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-13ERF family protein