PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g005070.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 253aa MW: 27923.6 Da PI: 5.7914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g005070.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92	6.9e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C l+p + p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q + Sopen05g005070.1 4 SCNGCRVLRKGCSENCSLRPSLqwiksPDSQANATVFLAKFYGRAGLINLINAGPQHLRPAIFRSLLYEACGRIINPVNGSVGLMCSGNWQRC 96 6******************************************************************************************** PP DUF260 89 qlkaelallk 98 q ++e +l + Sopen05g005070.1 97 QDAVESVLKG 106 *999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.284	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPQH 60 LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV ESVLKGSTIM QVPINNDDDN 120 NSSDQIVPLK GCDIRHVSKY NSTNSDNQQV KTRNGRLKRK GSTFDSVASA SAEAEAAEEY 180 LLKNQPPLKF SITGWDQFEE IEDEMIKRSQ SHDSFSVETV EPTLLVNRVD PVKLEEDGDL 240 LGLDLTLGLM SPA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075737.1	0.0	LOB domain-containing protein 42-like
Swissprot	Q9M886	8e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A3Q7GEH2	1e-169	A0A3Q7GEH2_SOLLC; Uncharacterized protein
STRING	Solyc05g009320.2.1	1e-170	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-70	LOB domain-containing protein 41