PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 234aa    MW: 26713.7 Da    PI: 7.7408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-1183127554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h  +Er+RR++i + f  L +l+P +      K++Ka+iLe A   I++L
  Sopen05g005450.1  83 HLLAERKRRKKISKLFVSLASLIPGL-----NKMDKASILEGAATLIRQL 127
                       7789*********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1376137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4378127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1282139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-883127No hitNo description
PfamPF000104.5E-983127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1184133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDDLALIFSH HNNGESSRKQ LHKEKEDEKA NSLACIISFN NNFENSLLIP KDEANNTISF  60
SNINNIISAK FGERRSGEQA LEHLLAERKR RKKISKLFVS LASLIPGLNK MDKASILEGA  120
ATLIRQLGER AKEDDHHQST IDMMNKNNLL PEVEIKSLEK ELLITILLYK NQQKRNIDEI  180
LSVIQRLHLT IKTTNFMPFG TTSMHITVIA QMNDEFCETT DFLAEKLRSL INKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075885.11e-169transcription factor bHLH18-like
TrEMBLM1AZM01e-132M1AZM0_SOLTU; Uncharacterized protein
STRINGSolyc05g009640.2.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14501910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-24bHLH family protein