PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 400aa    MW: 44043.4 Da    PI: 6.7976
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.9e-32220275156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sopen05g005540.1 220 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 275
                       79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.542217277IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-29218278IPR009057Homeodomain-like
SuperFamilySSF466891.79E-18218278IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-27220275IPR006447Myb domain, plants
PfamPF002491.6E-7222273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMSNNNFSDK MERCQQYIDA LEQERTKIQV FSRELPLCLE LVTQAIETYK QQLSGTTIEY  60
NLNAQSTECS DDEHTSSDVP ILEEFIPLKS TFSHEDEDED ENDEENQSHK SKSFNNTNNS  120
TSSKDTKNKK SDWLRSVQLW NQTSDPTPKE ELTPKKVSVV EVKKNGSGGA FHPFKKEKNT  180
VAAVVEMTPA PAGVVLAATG SSTVENGGES KKEDKDGQRK QRRCWSPELH RRFLHALQQL  240
GGSHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSSIHNNNNQ QPPQFVVVGG  300
IWVPPPEYAS MAAGAPAASG EASGVAYSNG IYAPIATHPK GPLHDHASGG TLRQHNNKSS  360
RSERSSERDG SHSHSDCGGV HSNSPATSSS THTTTASPAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-13220273255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074811.10.0transcription factor HHO2
SwissprotQ8VZS32e-98HHO2_ARATH; Transcription factor HHO2
TrEMBLA0A3Q7GFL80.0A0A3Q7GFL8_SOLLC; Uncharacterized protein
STRINGSolyc05g009720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52192438
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.19e-84G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]