PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g006290.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 194aa MW: 22474.2 Da PI: 6.3024

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g006290.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.4	3.7e-14	80	138	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+++NRe+ArrsR RK+ +++eL v L +eN+ L+++l++ ++ +k+ +e+ Sopen05g006290.1 80 RKKRRMISNRESARRSRMRKQRQLDELWSQVVRLRTENHNLIDKLNHVSECHDKVLQEN 138 6889*******************************************999888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	76	140	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.611	78	141	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-12	80	138	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-12	80	153	No hit	No description
SuperFamily	SSF57959	4.97E-12	80	129	No hit	No description
CDD	cd14702	5.25E-20	81	132	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MIPSEAAATH YFASQNPSPL PLDFNFMQNN LPSLHFSRYL TNILPNYPVN DFNNLIPSCI 60 SGNSTSDETD EQQLKIIDER KKRRMISNRE SARRSRMRKQ RQLDELWSQV VRLRTENHNL 120 IDKLNHVSEC HDKVLQENAQ LKEETSDLRQ MLTDLQFNSP FPDLCELEDV PCTTAHLKAE 180 SSNLSITHST NLLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	99	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075661.1	1e-142	basic leucine zipper 43-like
Swissprot	Q9FMC2	4e-38	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A3Q7GBZ6	1e-139	A0A3Q7GBZ6_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400019465	1e-132	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	6e-48	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]