PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g008160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25592.6 Da    PI: 4.9159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g008160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.3e-144411350
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      + k +++i KK  ELS+LCd++++vi++ ++gk+ +++
  Sopen05g008160.1  4 YNKKKETIKKKTRELSILCDVKACVILVDPNGKVDTWP 41
                      789**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.101144IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-13365IPR002100Transcription factor, MADS-box
PfamPF003193.1E-11340IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLNYNKKKET IKKKTRELSI LCDVKACVIL VDPNGKVDTW PENPTDFNPI IQSYKENLCH  60
GKRKRIDDDG CFEKKSKKNH ALFCDDDENQ WLNDVFRESN ESLLVKLNSK LEAVERRIEV  120
LKMMNYGNGV VGGSSSSAKE SLLANQETHN RLENSNAYNQ ETEIAMAAEF WVIGGDESAY  180
NQSKEIDFLR DNATLNNLNN VQNFGYDDHL WPVIATSEFS TCIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075284.11e-166uncharacterized protein LOC107019249
TrEMBLA0A3Q7H8V21e-149A0A3Q7H8V2_SOLLC; Uncharacterized protein
STRINGSolyc05g013370.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1595856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-07AGAMOUS-like 103