PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g008230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 161aa    MW: 18205.4 Da    PI: 9.9858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g008230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-121055247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      grW+++E+  ++ +  + G+g+W++Ia+++  +Rt+ q+ s+ qky
  Sopen05g008230.1 10 GRWSEDEQRAFLIGLDKVGKGNWTRIAKEFVPTRTPTQVASHAQKY 55
                      8******************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.794460IPR017930Myb domain
SuperFamilySSF466895.67E-15761IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-12857IPR009057Homeodomain-like
SMARTSM007174.0E-10858IPR001005SANT/Myb domain
PfamPF002495.4E-111055IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.8E-141159IPR006447Myb domain, plants
CDDcd001673.11E-91156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSSRRSSKGG RWSEDEQRAF LIGLDKVGKG NWTRIAKEFV PTRTPTQVAS HAQKYFDRQK  60
ENKVNKHKKR SVFDIDLGEE SSNTRLELLS KRAYNKKDHK EILNEESPIS AMPIRYILPP  120
NGSYACYEFN FMSLSTNATP VVRGASSQSS SASTDDLDLS L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075990.11e-118probable transcription factor At5g61620
SwissprotQ9FKF93e-21M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A3Q7H8W61e-104A0A3Q7H8W6_SOLLC; Uncharacterized protein
STRINGSolyc05g013420.1.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-20MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]