PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g008240.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 224aa    MW: 25184.8 Da    PI: 8.6861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g008240.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-153277247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +rW++eE+  ++++ ++lG+g+W+ Ia+ +   Rt+ q+ s+ qky
  Sopen05g008240.1 32 KRWSEEEHRAFLCGLEELGTGNWSEIAKQFVPSRTRTQISSHAQKY 77
                      69****************************99*************9 PP
2Myb_DNA-binding37.26.9e-12141185247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       g+WT+eE+e ++ + ++ G + W+++++++ + Rt+ q+ s+ qky
  Sopen05g008240.1 141 GKWTEEEHEAFLIGMEKVGRN-WTRVSKEFVQSRTPTQITSHAQKY 185
                       89*****************66.***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0512582IPR017930Myb domain
SuperFamilySSF466891.73E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-142979IPR006447Myb domain, plants
SMARTSM007171.6E-113080IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-123076IPR009057Homeodomain-like
PfamPF002496.9E-133277IPR001005SANT/Myb domain
CDDcd001671.01E-103378No hitNo description
PROSITE profilePS5129416.262135190IPR017930Myb domain
SuperFamilySSF466892.0E-14136191IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-13138187IPR006447Myb domain, plants
SMARTSM007172.0E-8139188IPR001005SANT/Myb domain
PfamPF002491.1E-9141185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-10141185IPR009057Homeodomain-like
CDDcd001671.43E-5142186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGDSNGSFKL FGVTINNDEN EDSVSVSQKK GKRWSEEEHR AFLCGLEELG TGNWSEIAKQ  60
FVPSRTRTQI SSHAQKYFAW QKAKNDKAAK STSNVDSSSP TSGKEDSNEE RPLSPMPISY  120
SVPNVSNNGD SVNLLSRKQE GKWTEEEHEA FLIGMEKVGR NWTRVSKEFV QSRTPTQITS  180
HAQKYFESLR NNRGPKRSVF DITLEQESTS TCPESVTKGK QVLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075285.11e-165transcription factor DIVARICATA-like
SwissprotQ9FKF91e-16M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A3Q7GG851e-130A0A3Q7GG85_SOLLC; Uncharacterized protein
STRINGSolyc05g013430.1.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1855144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-19MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]