PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g009290.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 582aa    MW: 65448.2 Da    PI: 6.4211
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g009290.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.57.1e-24199252155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r++Wt +LH++Fv+av+q+ G +k  Pk+il+lm+++ Lt+e+v+SHLQkYRl
  Sopen05g009290.1 199 KARVVWTVDLHQKFVKAVHQI-GFDKVGPKKILDLMGIPWLTRENVASHLQKYRL 252
                       68*******************.9*******************************8 PP
2Response_reg78.72e-26251331109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ +++l+++l+k  y +v+++  ++eal  l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++
  Sopen05g009290.1  25 VLVVDDDPTWLKILEKMLKKCSY-QVTTCGLAREALYVLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQ 115
                       89*********************.***************999999**********************6644.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ ++el++
  Sopen05g009290.1 116 HGACDYLLKPIRMKELRN 133
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-4422167No hitNo description
SuperFamilySSF521721.37E-3522147IPR011006CheY-like superfamily
SMARTSM004482.2E-3123135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.424139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2325134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.19E-3026139No hitNo description
Gene3DG3DSA:1.10.10.605.2E-27197257IPR009057Homeodomain-like
SuperFamilySSF466895.91E-17197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-21199252IPR006447Myb domain, plants
PfamPF002491.3E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MMENSKTSVG FSSPRTDTFP AGLRVLVVDD DPTWLKILEK MLKKCSYQVT TCGLAREALY  60
VLRERKDGFD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM MSVDGETSRV MKGVQHGACD  120
YLLKPIRMKE LRNIWQHVLR KKMQEARDIG NHELDQYDEV WILNGAEILS GKKRKDFENK  180
HDEREMSDSR CVDSSSMKKA RVVWTVDLHQ KFVKAVHQIG FDKVGPKKIL DLMGIPWLTR  240
ENVASHLQKY RLYLTRLQKE DEAKDSFIGT KHPDVSSKEI CSSLSLQNSL DACIDVTNEK  300
YGCVTGDKAI VQNGKSNICE SKVKGVVSVP AAEPRSVVED NFDPQTTGSK IGLNDSFGLV  360
NTNVKSAKVP IPYCSTGEAP QPQYKQQDFK PQFRSANGLC HQPLPVVSPQ IPVDHTQETC  420
FVNHTPSHEE RDRHPDTKNR PSFFKTKNEV VGKFSPVESN INLFQPVSHQ QTNFHTLEQM  480
PSTTWRATSH NVVNGPQSSP GNLTLRSGSI VASVGEEMHG ASIQGECFLA NNGLPNIEQF  540
DYNDPQPISG VPTYLYDTLR FDYEYPIDSL EGNVIDQGLF II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16195257163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074682.10.0two-component response regulator ARR11 isoform X1
SwissprotQ5N6V81e-126ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A3Q7GFL40.0A0A3Q7GFL4_SOLLC; Two-component response regulator
STRINGSolyc05g014260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-124response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]