PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g009670.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 228aa    MW: 26127.6 Da    PI: 5.4195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g009670.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-124388555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +   Er RR++++++++ Lr l+Pk      +K++Ka+i++ A+eYI +Lq
  Sopen05g009670.1 43 NIVSERIRRNKLKEKLFALRALVPKI-----TKMDKASIVKDAIEYIVELQ 88
                      5567*********************7.....7***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1733887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1641105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-104290No hitNo description
PfamPF000102.1E-104388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1643106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVEENNNYLE TILLFQQDSY LDEPIMSSHY DSSSPEGSQS SKNIVSERIR RNKLKEKLFA  60
LRALVPKITK MDKASIVKDA IEYIVELQKQ DRRIRGEISE LESETSNKNS AHLEHETFDF  120
SNPKTLDKHQ YGYHSSPIDV LQLRVSSMRD RIVVVNLTCI KRKDTMIKLC DVFESLNIKI  180
ITANIIAYSE TLLNTTYIEA DEEESNLLKL RIQSAIASLN NPDSPLSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-118HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075806.11e-165transcription factor bHLH35-like
TrEMBLA0A3Q7GGV41e-146A0A3Q7GGV4_SOLLC; Uncharacterized protein
STRINGSolyc05g014590.2.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-65bHLH family protein