PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g011110.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 964aa MW: 108263 Da PI: 5.9737

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g011110.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.3	3.3e-54	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +e + rwlk+ e++ iL n+e+h+l++e+ ++p+sgsl+Lyn++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+f Sopen05g011110.1 13 REaQIRWLKPAEVLFILRNHENHQLSSEPSQKPPSGSLFLYNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNPNF 105 55589************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L+ ++++ivlvhy++ Sopen05g011110.1 106 QRRSYWMLDPAYDHIVLVHYRD 127 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.407	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-75	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.8E-48	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.7E-8	392	479	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.1E-9	395	478	IPR002909	IPT domain
CDD	cd00102	0.00185	395	479	No hit	No description
SuperFamily	SSF81296	1.54E-18	395	479	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	4.7E-14	576	688	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.079	594	686	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.26E-14	596	688	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.05E-12	599	686	No hit	No description
Pfam	PF12796	2.2E-6	614	687	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0038	627	656	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.06	627	659	IPR002110	Ankyrin repeat
SMART	SM00015	15	744	766	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	745	774	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.49E-5	795	851	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	4.3	803	825	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.529	804	833	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	806	824	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0056	826	848	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.791	828	852	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.0E-5	829	848	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MAESGYDIND LVREAQIRWL KPAEVLFILR NHENHQLSSE PSQKPPSGSL FLYNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYDHI 120 VLVHYRDIIE GRQNPAFMSE SSPISSAFSP SPSSYSTPHT GSTGIASESY EQYQNQSSPG 180 EICSDAIINN NGMSDTIGRT EEVISSPGLE MSLALRRLEE QLSLNDDSLK EIDPLYGDAI 240 NDDSSLIQMQ GNSNRLLLQH HSGESSESHH QDLTQDAHVW KDMLDHYGVS AAAESQTKYL 300 HKLDENAMLQ TLSERRAIEA YESYKWRDFS DKEAQTAPVQ AFKQLEDFKY PTYPSDITTF 360 GSNPDEYTTI FDQDQIGTSL EDEMSLTIAQ KQKFTIRHIS PDWGYSSEPT KIVIIGSFLC 420 NPSECTWTCM FGDIEVPVRI IQEGVICCQA PRHLPGKVTL CVTSGNRESC SEVREFEYRV 480 KPDDCARNNQ PDVEGAYRST DELLLLVRFV QLLLSDLSVQ KGESSELGND LLEKSKASED 540 SWSHIIESLL FGTSVPMVTI DWLLQELLKD KFQQWLCSKL QQKDNQIDCS LSKKEQGIIH 600 MVAGLGFEWA LHPILNAGVS ANFRDINGWT ALHWAARFGR EKMVASLIAS GASAGAVTDP 660 SSRDPVGKTA ASIASSCGHK GLAGYLSEVA LTSHLSSLTL EESELSKGTA DVEAERTISS 720 ISNTSATINE DQRSLKDTLA AVRNAAQAAA RIQSAFRAHS FRKRQQREFG VSATTSGDEY 780 GILSNDIQGL SAASKLAFRN PREYNSAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG 840 YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDTESI DEIEDEDILK VFRKQKVDAA 900 LDEAVSRVLS MVESPGARQQ YHRILEKYRQ SKAELEGADS ETASTAHGDM SNMENDDIYQ 960 FPSY

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MAESGYDIND LVREAQIRWL KPAEVLFILR NHENHQLSSE PSQKPPSGSL FLYNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYDHI  120
VLVHYRDIIE GRQNPAFMSE SSPISSAFSP SPSSYSTPHT GSTGIASESY EQYQNQSSPG  180
EICSDAIINN NGMSDTIGRT EEVISSPGLE MSLALRRLEE QLSLNDDSLK EIDPLYGDAI  240
NDDSSLIQMQ GNSNRLLLQH HSGESSESHH QDLTQDAHVW KDMLDHYGVS AAAESQTKYL  300
HKLDENAMLQ TLSERRAIEA YESYKWRDFS DKEAQTAPVQ AFKQLEDFKY PTYPSDITTF  360
GSNPDEYTTI FDQDQIGTSL EDEMSLTIAQ KQKFTIRHIS PDWGYSSEPT KIVIIGSFLC  420
NPSECTWTCM FGDIEVPVRI IQEGVICCQA PRHLPGKVTL CVTSGNRESC SEVREFEYRV  480
KPDDCARNNQ PDVEGAYRST DELLLLVRFV QLLLSDLSVQ KGESSELGND LLEKSKASED  540
SWSHIIESLL FGTSVPMVTI DWLLQELLKD KFQQWLCSKL QQKDNQIDCS LSKKEQGIIH  600
MVAGLGFEWA LHPILNAGVS ANFRDINGWT ALHWAARFGR EKMVASLIAS GASAGAVTDP  660
SSRDPVGKTA ASIASSCGHK GLAGYLSEVA LTSHLSSLTL EESELSKGTA DVEAERTISS  720
ISNTSATINE DQRSLKDTLA AVRNAAQAAA RIQSAFRAHS FRKRQQREFG VSATTSGDEY  780
GILSNDIQGL SAASKLAFRN PREYNSAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG  840
YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDTESI DEIEDEDILK VFRKQKVDAA  900
LDEAVSRVLS MVESPGARQQ YHRILEKYRQ SKAELEGADS ETASTAHGDM SNMENDDIYQ  960
FPSY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566048	0.0	JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015076624.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A3Q7GGC9	0.0	A0A3Q7GGC9_SOLLC; Uncharacterized protein
STRING	Solyc05g015650.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]