PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g011240.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 116aa MW: 13332.4 Da PI: 10.9552

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g011240.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.6	9.2e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rq tfskRrng++KK + LSvLCd++v v++fss+ +l+e+ss Sopen05g011240.1 9 KRIEDKSSRQATFSKRRNGLMKKSKQLSVLCDVDVVVLVFSSRERLFEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.45E-26	1	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-33	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.819	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MGRKKVEIKR IEDKSSRQAT FSKRRNGLMK KSKQLSVLCD VDVVVLVFSS RERLFEFSST 60 NRFPFLAQTT AAVTIVVDKT TDISSFTCLH LRYMSQSFFF PSPTSQNQHS KPPHQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	3e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-98	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075872.1	6e-35	agamous-like MADS-box protein AGL27
Swissprot	Q8RU31	1e-23	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	A0A0V0HPI5	6e-33	A0A0V0HPI5_SOLCH; Putative ovule protein
STRING	Solyc05g015730.1.1	6e-35	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	1e-15	AGAMOUS-like 31

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710]