PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g014200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 135aa    MW: 15555.1 Da    PI: 3.6088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g014200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.4e-135643699
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + le ++g++Wev++  ++++g+++l+kGW++F+    + ++  +vF+++ rs f  vv ++++
  Sopen05g014200.1  5 VFLEAPHGKVWEVEV--ENSQGQIWLAKGWNNFCVYYSISVKSLLVFTYNPRSHF--VVAIYDQ 64
                      7899***********..********************************988888..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.871165IPR003340B3 DNA binding domain
CDDcd100172.39E-11363No hitNo description
Gene3DG3DSA:2.40.330.101.4E-12465IPR015300DNA-binding pseudobarrel domain
PfamPF023628.9E-10464IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-13472IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MLNSVFLEAP HGKVWEVEVE NSQGQIWLAK GWNNFCVYYS ISVKSLLVFT YNPRSHFVVA  60
IYDQSRTEIE YPIDQDIESN EEEEDTLVLQ ANVNVMTEEE EDIPVNLQAN ANVIEEEEED  120
IPVNLQANDY VIEQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769992.12e-67uncharacterized protein LOC107010007
TrEMBLA0A3Q7FGM03e-63A0A3Q7FGM0_SOLLC; Uncharacterized protein
STRINGSolyc03g044110.1.13e-64(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.17e-13B3 family protein