PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g017100.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 413aa    MW: 45019.1 Da    PI: 5.6647
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g017100.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06344439
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      ++C+ ++e++ + +C+++  +lC +C  + H+       H++
  Sopen05g017100.1  3 HMCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                      58*****************************65677777765 PP
2CCT63.18.7e-22356399144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R  a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Sopen05g017100.1 356 RSDAVLRYKEKKKTRKFDKHVRYASRKARADVRRRVKGRFVKAG 399
                       889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.0E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.57147IPR000315B-box-type zinc finger
CDDcd000211.52E-7447No hitNo description
PfamPF062032.8E-16356398IPR010402CCT domain
PROSITE profilePS5101715.011356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGHMCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAIVRR  60
VEEKVSLCKN CDSIGHAGSG TGSMHNRQAL SSYTGCPSAA ELSTIWSFLL DNSLGGDSTC  120
EKGMGSMSIT DNRLTDSRAP QGKFNSQDAS ATVEVSEIHT PGKSSILVGS SMPNLGNKLN  180
KVEHIAGSVN ISSSKDCYSG VKASTIYEDD PFSQDFNMDE VDLSFENYEE LFSGSLDNPN  240
QLFENDDIDG LFGTKDMSVS DSSCQDANAV EGSSIRRVMS ILPACSKAES ADSLMSCKTE  300
PTVCFARQAS ILSFSNLGGE SNDGDYQECG ASTMLLMGEP PWCHPCPESS LASSSRSDAV  360
LRYKEKKKTR KFDKHVRYAS RKARADVRRR VKGRFVKAGD AYDYDPLNET RSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076447.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015076448.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015076449.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015076450.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015076451.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015076452.10.0zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-125COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM1A3340.0M1A334_SOLTU; B-box zinc finger protein 13
STRINGSolyc05g020020.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-112B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]