PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g017290.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 206aa MW: 23696.3 Da PI: 9.2992

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g017290.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	72	1.6e-22	2	68	64	128
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 r +ky+++ r+nr+tksg+Wkatg dk+v+s++++ +glkk Lv+y+g+a kg+ktdW+mhe+rl Sopen05g017290.1 2 RGRKYKNSVRPNRVTKSGFWKATGIDKPVYSSTTKCiiIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 68 5799*************************84433459************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.399	1	89	IPR003441	NAC domain
SuperFamily	SSF101941	9.42E-27	2	89	IPR003441	NAC domain
Pfam	PF02365	2.0E-9	12	68	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MRGRKYKNSV RPNRVTKSGF WKATGIDKPV YSSTTKCIII GLKKCLVYYR GSAGKGTKTD 60 WMMHEFRLPL TSNTNQQAEV WTLCRIFKRS SSTYKRSSYN TQEVKHPIGD ASSKACSLES 120 DENSTDHDHS NSFRDMSFQH QNYNNYVAQM DETRNQQNPI PHESTFPSSS SISFWNTNST 180 QEDYLFGDHG NKWDDLKSIV DLATMM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-25	2	95	79	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-25	2	95	79	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-25	2	95	79	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-25	2	95	79	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-24	2	95	82	174	NAC domain-containing protein 19
3swm_B	1e-24	2	95	82	174	NAC domain-containing protein 19
3swm_C	1e-24	2	95	82	174	NAC domain-containing protein 19
3swm_D	1e-24	2	95	82	174	NAC domain-containing protein 19
3swp_A	1e-24	2	95	82	174	NAC domain-containing protein 19
3swp_B	1e-24	2	95	82	174	NAC domain-containing protein 19
3swp_C	1e-24	2	95	82	174	NAC domain-containing protein 19
3swp_D	1e-24	2	95	82	174	NAC domain-containing protein 19
4dul_A	8e-25	2	95	79	171	NAC domain-containing protein 19
4dul_B	8e-25	2	95	79	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027772841.1	1e-155	transcription factor JUNGBRUNNEN 1-like isoform X1
Refseq	XP_027772842.1	1e-155	transcription factor JUNGBRUNNEN 1-like isoform X2
Swissprot	Q9SK55	7e-50	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3Q7GJY2	1e-149	A0A3Q7GJY2_SOLLC; Uncharacterized protein
STRING	Solyc05g021090.2.1	1e-150	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-44	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]