PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g018710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 456aa    MW: 49945.1 Da    PI: 7.1669
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g018710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06639336
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                       r C+ ++++ + l+C+ +   lC  C +  H+ 
  Sopen05g018710.1  6 SRPCDFCNQQIAVLYCRADTAKLCLFCDQLVHSA 39
                      678**************************99954 PP
2zf-B_box24.74.7e-084993341
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       ++C++++++++++ C +++  lC++C    H +      H+++p
  Sopen05g018710.1 49 SQICDNCGSEPVSIRCDTDKLVLCQECDWDAHGScavsgaHDRSP 93
                      579*************************99994488888888776 PP
3CCT64.24e-22408451144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Sopen05g018710.1 408 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 451
                       7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456451IPR000315B-box-type zinc finger
SMARTSM003362.0E-10451IPR000315B-box-type zinc finger
CDDcd000219.41E-7739No hitNo description
PROSITE profilePS501199.7124794IPR000315B-box-type zinc finger
PfamPF006438.0E-65093IPR000315B-box-type zinc finger
CDDcd000217.26E-75194No hitNo description
SMARTSM003360.745294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912408450IPR010402CCT domain
PfamPF062031.7E-16408450IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSPGESRPCD FCNQQIAVLY CRADTAKLCL FCDQLVHSAN ALSKKHLRSQ ICDNCGSEPV  60
SIRCDTDKLV LCQECDWDAH GSCAVSGAHD RSPVEGFSGC PSASDLASAW GLDIESKKLH  120
QQHTVLEYPS WMSKDAPPSS VLLQDLMVPS AINSAIYSTK QTPTCGKQKQ VIFKQLIELF  180
KRDLADGVGA GAGAGAEDLV PKTPNATSDW QGNINVSIMD GVTQKPQQQQ PQNVPFTSSI  240
MPHNPKDSDQ MVERNILWRG NSFDQNTQIW DFNLGQLRSH EQSSSLEADY SESDMACMMK  300
SYGELIKGTS LATSKVLGLS GINCSVVHDD MTAFSNNSNN RAASQGPATS ESNNLPRIKT  360
SSDLGCVKPK CGGVSTDLNF MDQSIVVGGD NTGEETVKAD MELLAKNRGN AMQRYKEKKK  420
TRRYDKHIRY ESRKARADTR KRVKGRFVKA NESPDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076841.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A3Q7GKA90.0A0A3Q7GKA9_SOLLC; Uncharacterized protein
STRINGSolyc05g024010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.13e-97B-box type zinc finger protein with CCT domain