PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028010.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 336aa    MW: 38395.3 Da    PI: 8.9163
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.72e-151150342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ie+ ++r++++ kR++g+lKK  EL +LCd+eva +i+++
  Sopen05g028010.1 11 IEDGTKRKISYDKRLKGLLKKSDELKTLCDVEVATVIYGP 50
                      99************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.96149IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-10161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-19296IPR002100Transcription factor, MADS-box
CDDcd002664.33E-18284No hitNo description
PRINTSPR004048.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.7E-161158IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTRNKVNYAL IEDGTKRKIS YDKRLKGLLK KSDELKTLCD VEVATVIYGP YRNEPYAFPN  60
NNVVRNTFIK FKELPILDRS KKMVTREEFT MKRIKKLEEQ LQKIRKENRV KEMTNEMYEL  120
FNRKTLSVDM STSYLNDLRC VIKKNLKQVH ELMIKEADGE GFTSNAPQPI VEPMVSSRDN  180
FEGPMDPSPL LFSEMFPPMF PQLFSPMLQH KTVGKTPRLT HQMPSTKMNS PIPSPKMDSL  240
MPSQTIDSPM PSLTMDPPIY SLVSPTLTQQ IEPSMDVPSI GISTSTNNDH NLSVNLPDSP  300
TISGLLNTKD DDVMTLLDDP FFKNINVQDP NNAKKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11525KRKISYDKRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321633.10.0MADS-box transcription factor PHERES 1-like
TrEMBLA0A3Q7HEA10.0A0A3Q7HEA1_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000886540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.13e-30AGAMOUS-like 38