PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028730.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 211aa    MW: 23736.9 Da    PI: 7.2662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028730.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.22.1e-2096152258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg nWrKYGqK + g+++ r Y++C + +C ++k v++ +++p  +e tY g+H +
  Sopen05g028730.1  96 KDGLNWRKYGQKLILGAKYHREYFQCVYCHCDATKMVQQIETEPLSFEATYGGSHSC 152
                       7******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.65290151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-2091154IPR003657WRKY domain
SuperFamilySSF1182909.94E-2094154IPR003657WRKY domain
SMARTSM007747.3E-2095154IPR003657WRKY domain
PfamPF031065.8E-1996152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKQDVCRYLA AEILSSYDKA MSLLNGTALS GMMSKSKEII NPAPSSSTAP QLEFPQLLAD  60
SSTKSCDRPS KLRKRKTLAP RTEYVEARPG EEVSPKDGLN WRKYGQKLIL GAKYHREYFQ  120
CVYCHCDATK MVQQIETEPL SFEATYGGSH SCGQENKNQN EEVLVAVETQ VGRAAGQLYE  180
CYIPEMVLTQ NNSYKTKYPS DSTYEILQLF S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-162HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772695.11e-158probable WRKY transcription factor 41
TrEMBLA0A3Q7GLM11e-127A0A3Q7GLM1_SOLLC; Uncharacterized protein
STRINGSolyc05g050330.2.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-20WRKY family protein