PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g029260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 94aa    MW: 11091.3 Da    PI: 9.1177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g029260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.31.9e-086384224
               AP2  2 gykGVrwdkkrgrWvAeIrdpse 24
                      +y+GVr+++ +g+++AeIrdp++
  Sopen05g029260.1 63 RYRGVRRRP-WGKFAAEIRDPKK 84
                      8********.**********843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.3646394IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-56385IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-96385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MHQENSTQFD LSILDSPLEH QFNGFNLESI SFDRSIDHTW EKIDKNEDNI PRSSSQVSNN  60
WKRYRGVRRR PWGKFAAEIR DPKKKVLGFG LELT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-158HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321615.16e-57ethylene-responsive transcription factor 13-like
TrEMBLA0A3Q7HEW41e-53A0A3Q7HEW4_SOLLC; Uncharacterized protein
STRINGSolyc05g050790.1.12e-56(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-11ethylene responsive element binding factor 4