PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g029310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 247aa    MW: 27984.2 Da    PI: 6.4221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g029310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1873122255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  Sopen05g029310.1  73 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAQMAARAHDVAALAIKG 122
                       69****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-2173131IPR016177DNA-binding domain
SMARTSM003805.2E-3673136IPR001471AP2/ERF domain
PROSITE profilePS5103223.01173130IPR001471AP2/ERF domain
PfamPF008472.2E-1273122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3173131IPR001471AP2/ERF domain
CDDcd000182.58E-3374132No hitNo description
PRINTSPR003673.0E-107485IPR001471AP2/ERF domain
PRINTSPR003673.0E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MKSQKEIINL ENHHDFISNG LSFPSNIAIS PSSSSSFSSS NALVSKKYQS SKKIEEEKKK  60
KKINNDDENK HPTYRGVRKR SWGKWVSEIR EPKKKSRIWL GTYPTAQMAA RAHDVAALAI  120
KGCSAHLNFP HLVGQYPHPA STCHKDIQAA AAKASAIPFP EEEEDQIESD QVELRNCHPS  180
TNLFLENAKE SLNSPSREDD DTFFDLPDLS IDVVDQTNSY WCTMSTWQQL IGADTTVYRL  240
DEPFLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17711311273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075712.10.0ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ74e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM1AA091e-126M1AA09_SOLTU; Uncharacterized protein
STRINGSolyc05g050830.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]