PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g029720.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 335aa    MW: 37702.1 Da    PI: 4.7327
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g029720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.99.1e-2658152297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       +f+r+w+e Dei +LqGl+d  +++      d++ fy  +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g + s+ ++hd+  ++lsk+
  Sopen05g029720.1  58 KFHRIWTEPDEIRFLQGLLDGSSENL-FFPRDLNVFYTRFSNTMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDRSLLSPHDRALYDLSKQ 149
                       699******************77776.4456************************************************************** PP

            DUF573  95 iWg 97 
                       +W+
  Sopen05g029720.1 150 LWH 152
                       **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.8E-2959152IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDSTLPLSQS IQITQPILPS SPNKLPVKRK ATDDPFTGAG AGDANGGVGE MGSDPPFKFH  60
RIWTEPDEIR FLQGLLDGSS ENLFFPRDLN VFYTRFSNTM SQPYTKSQLS EKLRRLRKKF  120
RVISSRLSKG LDRSLLSPHD RALYDLSKQL WHPDFSDTSP FNAEKSKKSN LVGVKVSFLP  180
NIYDPNRYGI VPYQDENGSN CNGVSVNEEV EQGEEDKEND GNVEFDDEDG KLSEVNVELD  240
TGEIGDERVE FSRVNGPVPV GIEFGVGDTA AKVVMDVFDE CLKDFRNGER SNLGAVMKET  300
SSNEFEERWK EQRVAELKVL ARRMRLVLEH SLQSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075164.10.0probable transcription factor At5g28040
TrEMBLA0A3Q7HF630.0A0A3Q7HF63_SOLLC; Uncharacterized protein
STRINGSolyc05g051330.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-23DNA-binding storekeeper protein-related transcriptional regulator