PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g032000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 248aa    MW: 28166.4 Da    PI: 7.8053
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g032000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.8e-20182215134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +
  Sopen05g032000.1 182 CQHCGVDKTPQWRAGPTGPKTLCNACGVRYKSGR 215
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.387176212IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16176226IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-15178239No hitNo description
Gene3DG3DSA:3.30.50.103.2E-15179213IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.25E-15181230No hitNo description
PfamPF003201.0E-17182215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
METMYSKTCF MVDDDILNFS LDDDEEKYQT SSSSFGSSNT LGFHQDDHSP SFPDYVEEEL  60
EWLSNKDAFP AVEFDIFSDH VIFDHHSPNS VLENNNNNNN NCNVNLKDNA FTSHVSSLLQ  120
VPMNHPVGTR SKRRRRIALQ CDNSCVWGNQ VKFNNTSTKQ GLTLLKISMT KAKRGTSIGR  180
TCQHCGVDKT PQWRAGPTGP KTLCNACGVR YKSGRLFPEY RPANSPTFSV ELHSNSHRKV  240
LEMRKHRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KRRRRI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074900.10.0GATA transcription factor 1-like
TrEMBLA0A3Q7GM021e-164A0A3Q7GM02_SOLLC; Uncharacterized protein
STRINGSolyc05g053500.2.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-45GATA transcription factor 1