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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sopen05g032870.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 663aa MW: 73386.6 Da PI: 5.8907 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 92.6 | 3.1e-29 | 219 | 272 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Sopen05g032870.1 219 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 272
79*******************.********************************8 PP
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| 2 | Response_reg | 74.9 | 3e-25 | 39 | 147 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91
vl+vdD+p+ +++l+++l++ +y ev+ +e al +l+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + +
Sopen05g032870.1 39 VLVVDDDPTCLRILEKMLRNCHY-EVTKSNRAELALSMLRENRngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKDVVMKGVT 129
89*********************.***************99999***********************6644.8******************** PP
TTESEEEESS--HHHHHH CS
Response_reg 92 aGakdflsKpfdpeelvk 109
Ga d+l Kp+ +e+l +
Sopen05g032870.1 130 HGACDYLIKPVRIEALKN 147
**************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.2E-185 | 18 | 658 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 2.56E-35 | 36 | 160 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 4.2E-42 | 36 | 160 | No hit | No description |
| SMART | SM00448 | 1.7E-29 | 37 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.301 | 38 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 9.7E-23 | 39 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.94E-27 | 40 | 153 | No hit | No description |
| PROSITE profile | PS51294 | 11.351 | 216 | 275 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.18E-20 | 216 | 276 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 218 | 277 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.6E-25 | 219 | 272 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.0E-8 | 221 | 271 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 663 aa Download sequence Send to blast |
MNLGVGSVVK TMSGASCSVS WKSGGSDKVS DQFPAGLRVL VVDDDPTCLR ILEKMLRNCH 60 YEVTKSNRAE LALSMLRENR NGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS 120 KDVVMKGVTH GACDYLIKPV RIEALKNIWQ HVIRKKKHEW KDRDFDQSTS VEDGDQQQKP 180 PEDVDYSSSA NEGNWKSSKR RKEEEDETEE RDDSSTLKKP RVVWSVELHQ QFVQAVNQLG 240 IDKAVPKKIL ELMNVPGLTR ENVASHLQKY RLYLRRLSGV SQHQNGLNNS FMGHPEATYG 300 TMTSFNGLEL QALAATGQLP AQSLATLQAA ALGRSATKSA ISMPLVDQRN LFSFENPKLR 360 FSEGQQPLNN SNKQINLLHG IPTTMEPKQL ADLHQSSQSF VAMNMQGNAR MQQNNALLMH 420 MSQQQQQSSR AQMLNETNNG QVSRPPLSMS QPAAVLSRNS IVDNVRGPIY NPVSQTSSMV 480 DFSLNQTTEL QNNSFPLVSS NSGMSTLTSK RLLQEEVNSD IKGSRGFPPG YDIFEELHQQ 540 KTQDWGLPNI GSNFGASDHS SIPGTLDVSP SMLVQQGISS MKKNGQNGIA PMGGPQLNLF 600 SGGNLLPVKA EQLPDTSYQN TFFPEQFGQD DLMSALLKQQ ESVGQVETEF GFDGYSPLDN 660 LPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-21 | 218 | 278 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015076165.1 | 0.0 | two-component response regulator ARR1-like isoform X1 | ||||
| Refseq | XP_027772716.1 | 0.0 | two-component response regulator ARR1-like isoform X2 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | M1C607 | 0.0 | M1C607_SOLTU; Two-component response regulator | ||||
| STRING | Solyc05g054390.2.1 | 0.0 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3191 | 24 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 1e-171 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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