PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g033130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 172aa    MW: 19717.7 Da    PI: 9.1465
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g033130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0014567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ Fs+   L  H  +H
  Sopen05g033130.1 45 FECKTCNRQFSSFQALGGHRASH 67
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.78E-843112No hitNo description
PfamPF139121.2E-124469IPR007087Zinc finger, C2H2
SMARTSM003550.24567IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2424572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.4E-1089114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.20390114IPR007087Zinc finger, C2H2
SMARTSM003550.2790112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVVLPMKRER EGEFDITTMA NYLMLFSRQE NHFNTMVNNS PSRVFECKTC NRQFSSFQAL  60
GGHRASHKKP RLMGEMNFHL PISPPKPKTH ECSICGLEFP IGQALGGHMR RHRGMLNENN  120
NNNNNNQVPN HDVVKKSSNN PRVLCLDLNL TPLENDLEFK LKKANPIVDC FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075814.11e-125zinc finger protein ZAT11-like
TrEMBLA0A1U8GU691e-100A0A1U8GU69_CAPAN; zinc finger protein ZAT11-like
STRINGSolyc05g054650.1.11e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-38C2H2 family protein