PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g033680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 188aa    MW: 21500.8 Da    PI: 5.5758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g033680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09346344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       WT ++d+l+ ++  +++ +   +W +Ia +++ g+t+ ++  ++
  Sopen05g033680.1  3 TWTRDDDKLFEHGLVLYPENsadRWQLIADHVP-GKTADDIMAHY 46
                      7********************************.********999 PP
2Myb_DNA-binding41.72.8e-1397141347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Sopen05g033680.1  97 PWTEDEHRLFLIGLDKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129411.497154IPR017930Myb domain
SuperFamilySSF466893.45E-11258IPR009057Homeodomain-like
CDDcd001679.77E-9346No hitNo description
Gene3DG3DSA:1.10.10.605.4E-5348IPR009057Homeodomain-like
PfamPF002497.9E-8347IPR001005SANT/Myb domain
PROSITE profilePS5129421.68490146IPR017930Myb domain
SuperFamilySSF466891.38E-1692146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1793145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-1194140IPR009057Homeodomain-like
SMARTSM007172.3E-1094144IPR001005SANT/Myb domain
CDDcd001672.89E-997142No hitNo description
PfamPF002494.1E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSTWTRDDDK LFEHGLVLYP ENSADRWQLI ADHVPGKTAD DIMAHYDDLV HDVYEIDSGR  60
IDLPSYTDDP VELEGDCQIT SGSNKKSNEI ERKKGTPWTE DEHRLFLIGL DKYGKGDWRS  120
ISRNVVVSRT PTQVASHAQK YFIRQQAMKK ERKRSSIHDI TTAVDTNPVP PQSSFQNQSG  180
SQNFNFAM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2433390.0AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296804.11e-140transcription factor DIVARICATA
RefseqXP_015076073.11e-140transcription factor SRM1-like
SwissprotQ9FNN63e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3Q7HHE11e-139A0A3Q7HHE1_SOLLC; Uncharacterized protein
STRINGSolyc05g055240.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-72MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]