PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g034160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 459aa    MW: 51668.4 Da    PI: 8.5122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g034160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-3070127260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgy+WrKYGqK+vkgs+fprsYY+Ct ++C v+kkve +  +++v+ei+Y+g H+h+k
  Sopen05g034160.1  70 DDGYTWRKYGQKQVKGSNFPRSYYKCTEPKCLVRKKVESAP-NGHVIEIVYNGAHTHPK 127
                       8***************************************9.***************85 PP
2WRKY103.79.9e-33254311259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+a+d k v++tYeg+Hnhe
  Sopen05g034160.1 254 EDGYRWRKYGQKVVKGNPNPRSYYKCTSGGCTVRKHVERAADDFKSVITTYEGKHNHE 311
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-2663127IPR003657WRKY domain
PROSITE profilePS5081121.40264128IPR003657WRKY domain
SuperFamilySSF1182902.35E-2366127IPR003657WRKY domain
SMARTSM007741.1E-3269127IPR003657WRKY domain
PfamPF031065.3E-2470126IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-35238313IPR003657WRKY domain
SuperFamilySSF1182902.35E-28246313IPR003657WRKY domain
PROSITE profilePS5081137.206248313IPR003657WRKY domain
SMARTSM007747.2E-37253312IPR003657WRKY domain
PfamPF031065.7E-25254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDFLTIPPGI SPAALLDSPF MQPTSLTPTE NVGEILNCIE SRKNEEEFSK KQNQQYEQRG  60
IYNSANNSSD DGYTWRKYGQ KQVKGSNFPR SYYKCTEPKC LVRKKVESAP NGHVIEIVYN  120
GAHTHPKTRR KTSDVVAQQN GSSSSSDLLW RNDQYSRDVA AALEPVISDA SDSMLSNNIN  180
NVFESNDISS KLTTFDAENE HLATHFLGDG INQYEFETKR RKKDGYLAEP SSLSRTVREP  240
KVVLQVASEI DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SGGCTVRKHV ERAADDFKSV  300
ITTYEGKHNH EVPSTNKTNG VSGNVRSASM LNNGQQPCTT TSRKSLKDSN SRVQFQDLPI  360
PFERKHFMGS EYLRPSYLGD LSYGATSLQL PDFPLPLPLP SRMSFPARQN ESHFHLNNNF  420
LLPNGASNSF LADGSTQHIH GDNNNSRLVK AKDEIQYWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3470314878Probable WRKY transcription factor 4
2lex_A3e-3470314878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773064.10.0probable WRKY transcription factor 26
TrEMBLA0A3Q7GLD10.0A0A3Q7GLD1_SOLLC; Uncharacterized protein
STRINGSolyc05g055750.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.14e-80WRKY DNA-binding protein 34