PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g034870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 192aa    MW: 22699.4 Da    PI: 4.4897
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g034870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM951.2e-29111341128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGf F+Ptdeelv +yLk k++++  ++  +i++++  +++P++L++++  ++++wyfFs+ ++      ++nrat +gyWk+   +++++
  Sopen05g034870.1  11 LPPGFSFDPTDEELVLYYLKSKIASNL-PF--HIPHLHFSSSDPSQLNERALWSKNQWYFFSQVKE------NNNRATGRGYWKELNMNEPII 94 
                       79*********************9887.55..59*************977777899******9876......469****************** PP

               NAM  94 sk....kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                        k    k++ +g+kk +v+  + + ++ ++t+W+m+e++l
  Sopen05g034870.1  95 LKncgeKEKIIGIKKKFVYCiTSNIHEQVQTNWIMEEFHL 134
                       9999877888*********9555778889**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-358150IPR003441NAC domain
PROSITE profilePS5100534.19811152IPR003441NAC domain
PfamPF023653.0E-2312134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MMMDDQRVGD LPPGFSFDPT DEELVLYYLK SKIASNLPFH IPHLHFSSSD PSQLNERALW  60
SKNQWYFFSQ VKENNNRATG RGYWKELNMN EPIILKNCGE KEKIIGIKKK FVYCITSNIH  120
EQVQTNWIME EFHLTRENEK LLEWVVCRVH DSKNNSERIS CDDNDEIELS ALDEVFLSLD  180
DDQEQEEISF PY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-241015814174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-144HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345759.11e-135PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A1U8F0S41e-100A0A1U8F0S4_CAPAN; NAC domain-containing protein 104-like isoform X1
STRINGXP_009792377.19e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-30xylem NAC domain 1