PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g001080.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 194aa    MW: 21285.2 Da    PI: 4.906
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g001080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.68e-42411401100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++
  Sopen06g001080.1  41 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQVQ 133
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Sopen06g001080.1 134 LAKAQAE 140
                       **99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.8640141IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4241138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MESSGDTTNA TTITSSPPSS RSVSPSSSSP PSPQVAVVIS PCAACKILRR RCAEKCVLAP  60
YFPPNDPIKF TTAHRVFGAS NIIKFLQELP EFQRADAVSS MVYEANARLR DPVYGCAGAI  120
CQLQKQVNEL QVQLAKAQAE VVNMQCEQAN FMTLFCMENM TQSPPQQSLD NFTQINMSIL  180
DDNNVGSIWE TLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-434014810118LOB family transfactor Ramosa2.1
5ly0_B2e-434014810118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078864.11e-143LOB domain-containing protein 1-like
SwissprotQ9LQR07e-70LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7HI911e-122A0A3Q7HI91_SOLLC; Uncharacterized protein
STRINGSolyc06g005090.2.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-68LOB domain-containing protein 1