PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g001290.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 172aa    MW: 20214.6 Da    PI: 6.7904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g001290.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16243548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++++
  Sopen06g001290.1  2 TPQEERLILELHSKWGNR-WSKIAMKLP-GRTDNEIKNYWRTHM 43
                      9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.473147IPR017930Myb domain
CDDcd001671.43E-11143No hitNo description
SMARTSM007174.5E-12145IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-13249IPR009057Homeodomain-like
PfamPF002497.7E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTPQEERLIL ELHSKWGNRW SKIAMKLPGR TDNEIKNYWR THMRKKAHDE RKNNASSFSP  60
SSSFSNSSSF SSNSPDVNFT PIKKNNERNF YDTGGLDKKN DGDKMKVYSM DEIWKDIELS  120
QESETMNNIK PIMPSPIWNY CPNTLWMSNE EETKMFPQFY CLDNQDNTFF AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077550.11e-125transcription factor MYB48-like
TrEMBLA0A3Q7GRB81e-104A0A3Q7GRB8_SOLLC; Uncharacterized protein
STRINGSolyc06g005310.2.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.28e-36myb domain protein 48