PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g001300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 174aa    MW: 20491 Da    PI: 6.2817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g001300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-16243548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      T++E+ l+++++ ++G++ W++Iar++  gRt++++k++w++++
  Sopen06g001300.1  2 TPQEERLILELHSKWGNR-WSRIAREVS-GRTDNEIKNYWRTHM 43
                      9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.552147IPR017930Myb domain
CDDcd001672.09E-10143No hitNo description
SMARTSM007177.2E-11145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-19244IPR009057Homeodomain-like
PfamPF002493.6E-14242IPR001005SANT/Myb domain
SuperFamilySSF466893.82E-12247IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTPQEERLIL ELHSKWGNRW SRIAREVSGR TDNEIKNYWR THMRKKAQDE RKLKKASSII  60
SPSSSFSNTS SSFSSNSPDV DFTPIMKNNE RNFYDTGGLQ KKVVDHDKGK NMKVYSMDDI  120
WKDIELSEEN ETKSTKQIMP SPIWDYCPNT LWMADDQEES KMFPMFYCLD NQDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773184.11e-128transcription factor MYB48-like
TrEMBLA0A3Q7GNQ51e-104A0A3Q7GNQ5_SOLLC; Uncharacterized protein
STRINGSolyc06g005330.2.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.23e-34myb domain protein 48