PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g001550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 693aa    MW: 76733.1 Da    PI: 8.6425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g001550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07595643247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sopen06g001550.1 595 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 643
                       56777799*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.06E-10393485IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.0E-4397469No hitNo description
PROSITE profilePS500539.635399469IPR000626Ubiquitin domain
PROSITE profilePS5129413.527589648IPR017930Myb domain
SMARTSM007173.5E-6593646IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-10594644IPR009057Homeodomain-like
SuperFamilySSF466893.79E-15595676IPR009057Homeodomain-like
CDDcd116609.08E-17595645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MELHKRLDYG FIGYQVPHIP RATRSARGRG NIRKKSDSNE MCAFDLLTTV AGKLLLEGES  60
TSNSSGKDQS AVVKDTIETV KEDEDTPLKE NPCNERCQER GFFISQIVSE APVINHCLSK  120
STDTLSGPAS VITSSNCSEK LGSAEQFING ERKTENRNCS TKVEHELSGC RDFSSCTLGA  180
ESKKQVKLDL SNDATITTNK RAAVCSSEFP DPWDRKRSML VASDNTVKLS LSTDPDPFGS  240
FPVIRNDVQL ANKDDDEKSC GCTQPSTRNK AFRPAPRVGD WRMRKLQASK YWEVNPQSDD  300
EGHVNVDNET RHVYQKRENV YMNERSQRDF PFKKRKLYYC NSFSNSDGGS SDGICSSPTK  360
DLNRDASGYS LASSGARAAS GTSIPKGASA SFRSNDSHVK LKIKSFRVPE LFVEIPENAT  420
VGSLKRTVME AVTAILGGGL RIGVVFQGKK VRDDSKTLSQ AGISHDDKLD GLGFTLEPSP  480
SRASPPLGPE GCSRVLPCET PQPLTSRCSP GSTIIHNGMQ RETYNAFPDH SGTTLSNFIE  540
SDHDSAPSPP DASLEKNAAD SRALVPVAAM DAEALAVVPM RKPKRCETVQ RRIRRPFSVF  600
EVEALVQAVE KLGTGRWRDV KMRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP  660
QELLDRVLIA HAYWSQQQAR QQMKHQSETR LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-545816844107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326335QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080192.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_015080193.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_015080194.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_015080195.10.0telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E31e-135TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGSolyc06g005590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-133TRF-like 2